SRX213764
GSM1059178: polII chipseq rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
polII ChIP-seq
strain background
C57BL/6
cell type origin
embryonic stem cells
cell type
ES-derived neural progenitor cells
chip antibody
Polymerase II antibody
chip antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4576748
Reads aligned (%)
79.3
Duplicates removed (%)
33.7
Number of peaks
108 (qval < 1E-05)

mm9

Number of total reads
4576748
Reads aligned (%)
79.0
Duplicates removed (%)
34.3
Number of peaks
123 (qval < 1E-05)

Base call quality data from DBCLS SRA