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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: mESC derived neural cells
ATCC
MeSH
RIKEN BRC
SRX213760
GSM1059174: polII chipseq rep1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
source_name
polII ChIP-seq
strain background
C57BL/6
cell type origin
embryonic stem cells
cell type
ES-derived neural progenitor cells
chip antibody
Polymerase II antibody
chip antibody vendor
Abcam
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
4821492
Reads aligned (%)
78.6
Duplicates removed (%)
23.3
Number of peaks
113 (qval < 1E-05)
mm9
Number of total reads
4821492
Reads aligned (%)
78.3
Duplicates removed (%)
23.9
Number of peaks
128 (qval < 1E-05)
Base call quality data from
DBCLS SRA