SRX213758
GSM1059172: phf20 chipseq rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Phf20

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
phf20 ChIP-seq
strain background
C57BL/6
cell type origin
embryonic stem cells
cell type
ES-derived neural progenitor cells
chip antibody
PHF20 antibody
chip antibody vendor
Cell signaling

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4761656
Reads aligned (%)
88.0
Duplicates removed (%)
28.1
Number of peaks
108 (qval < 1E-05)

mm9

Number of total reads
4761656
Reads aligned (%)
87.7
Duplicates removed (%)
28.7
Number of peaks
129 (qval < 1E-05)

Base call quality data from DBCLS SRA