SRX213407
GSM1058730: MS pregnancy K27me3 ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Breast
Cell type
Mammary stem cells
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1058730
cell type
Mammary stem cells
state
12.5 days pregnant
chip antibody
Histone H3 trimethyl Lys27
strain
FVB/N
chip antibody manufacturer
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38038409
Reads aligned (%)
98.5
Duplicates removed (%)
46.3
Number of peaks
255 (qval < 1E-05)

mm9

Number of total reads
38038409
Reads aligned (%)
98.4
Duplicates removed (%)
47.2
Number of peaks
270 (qval < 1E-05)

Base call quality data from DBCLS SRA