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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: Mammary glands
ATCC
MeSH
RIKEN BRC
SRX213403
GSM1058726: MS K4me3 ChIPSeq rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Breast
Cell type
Mammary glands
NA
NA
Attributes by original data submitter
Sample
source_name
mammary gland
cell type
Mammary stem cells
state
virgin
chip antibody
Histone H3 trimethyl Lys4
strain
FVB/N
chip antibody manufacturer
Millipore
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
38835303
Reads aligned (%)
98.1
Duplicates removed (%)
46.4
Number of peaks
326 (qval < 1E-05)
mm9
Number of total reads
38835303
Reads aligned (%)
97.9
Duplicates removed (%)
47.6
Number of peaks
332 (qval < 1E-05)
Base call quality data from
DBCLS SRA