Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland
cell type
Mature luminal cells
state
virgin
chip antibody
Histone H3 trimethyl Lys4
strain
FVB/N
chip antibody manufacturer
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
18428862
Reads aligned (%)
97.7
Duplicates removed (%)
18.4
Number of peaks
12114 (qval < 1E-05)

mm9

Number of total reads
18428862
Reads aligned (%)
97.6
Duplicates removed (%)
20.3
Number of peaks
12199 (qval < 1E-05)

Base call quality data from DBCLS SRA