SRX212988
GSM1057594: Mash1 ChIPseq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ascl1

Cell type

Cell type Class
Embryo
Cell type
Neural tube
NA
NA

Attributes by original data submitter

Sample

source_name
spinal cord at embryonic day 12.5
age
embryonic day 12.5
tissue
spinal cord
chip antibody
Mash1
chip antibody vendor
Pharmingen

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9851397
Reads aligned (%)
97.2
Duplicates removed (%)
2.6
Number of peaks
894 (qval < 1E-05)

mm9

Number of total reads
9851397
Reads aligned (%)
97.2
Duplicates removed (%)
2.6
Number of peaks
893 (qval < 1E-05)

Base call quality data from DBCLS SRA