SRX212463
GSM1056954: H3K4me1 TconvRA- C; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+CD25-CD45RA- expanded memory conventional T cells
donor
C
cell type
CD4+CD25-CD45RA- expanded memory conventional T cells
chip antibody
H3K4me1 (abcam ab 8895)
chip antibody manufacturer
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33934153
Reads aligned (%)
98.5
Duplicates removed (%)
7.2
Number of peaks
17574 (qval < 1E-05)

hg19

Number of total reads
33934153
Reads aligned (%)
98.0
Duplicates removed (%)
8.2
Number of peaks
17004 (qval < 1E-05)

Base call quality data from DBCLS SRA