SRX212446
GSM1056937: FOXP3 TregRA+ A; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXP3

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+CD25+CD45RA+ expanded naive regulatory T cells
donor
A
cell type
CD4+CD25+CD45RA+ expanded naive regulatory T cells
chip antibody
FOXP3 (Novus NB600-245)
chip antibody manufacturer
Novus

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35145334
Reads aligned (%)
50.1
Duplicates removed (%)
25.6
Number of peaks
731 (qval < 1E-05)

hg19

Number of total reads
35145334
Reads aligned (%)
49.5
Duplicates removed (%)
27.5
Number of peaks
1007 (qval < 1E-05)

Base call quality data from DBCLS SRA