SRX212181
GSM1055809: ChIP-Seq input IMR90+TNF-α; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
Lung fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
fetal lung fibroblast
treatment
TNF-α (10ng/mL) 1hr
experiment
ChIP-seq
antibody
no
restriction enzyme
no

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19988007
Reads aligned (%)
93.5
Duplicates removed (%)
3.6
Number of peaks
749 (qval < 1E-05)

hg19

Number of total reads
19988007
Reads aligned (%)
92.8
Duplicates removed (%)
5.0
Number of peaks
1141 (qval < 1E-05)

Base call quality data from DBCLS SRA