Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Act5C

Cell type

Cell type Class
Cell line
Cell type
S2R+
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
embryo
tissue
embryo
cell line
S2R+
chip antibody
AC-74 (A2228)
treatment
non-heat shock
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM7671178
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
samples were dissected from fly strains were fixed in 1% PFA for 10 min at RT, homogenized using a pestle in 300 ml of RIPA buffer, and sonicated with Bioruptor (Diagenode). Immunoprecipitations were carried out with 5 µg antibody overnight at 4°C in a rotating wheel. ChIP libraries were prepared for Illumina NextSeq 500 using NEBNext ChIP-Seq DNA Sample Prep Master Mix Set for Illumina (NEB E6240) and NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) (NEB E7335) according to the manufacturer's protocols.

Sequencing Platform

instrument_model
NextSeq 500

dm6

Number of total reads
75295674
Reads aligned (%)
95.3
Duplicates removed (%)
72.7
Number of peaks
10108 (qval < 1E-05)

dm3

Number of total reads
75295674
Reads aligned (%)
96.0
Duplicates removed (%)
69.8
Number of peaks
13276 (qval < 1E-05)

Base call quality data from DBCLS SRA