SRX210698
GSM1053819: WT CenH3 ChIP-seq (replicate 1); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
CENPA

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
WT CenH3 ChIP
cell line
HeLa S3
cell type
Cervical cancer
genotype/variation
wild type
chip antibody
CENP-A (Enzo life science, ADI-KAM-CC006-E)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
85854775
Reads aligned (%)
99.2
Duplicates removed (%)
47.3
Number of peaks
13698 (qval < 1E-05)

hg19

Number of total reads
85854775
Reads aligned (%)
88.1
Duplicates removed (%)
72.7
Number of peaks
1101 (qval < 1E-05)

Base call quality data from DBCLS SRA