Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Nucleus Accumbens
MeSH Description
Collection of pleomorphic cells in the caudal part of the anterior horn of the LATERAL VENTRICLE, in the region of the OLFACTORY TUBERCLE, lying between the head of the CAUDATE NUCLEUS and the ANTERIOR PERFORATED SUBSTANCE. It is part of the so-called VENTRAL STRIATUM, a composite structure considered part of the BASAL GANGLIA.

Attributes by original data submitter

Sample

source_name
NAc dissection from 3-5 animals
passages
N/A
strain
C57BL/6
tissue
nucleus accumbens
treatment
Repeated saline I.P. injection for 1w as control
chip antibody
N/A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
41308474
Reads aligned (%)
98.8
Duplicates removed (%)
11.6
Number of peaks
919 (qval < 1E-05)

mm9

Number of total reads
41308474
Reads aligned (%)
98.7
Duplicates removed (%)
11.6
Number of peaks
971 (qval < 1E-05)

Base call quality data from DBCLS SRA