SRX209336
GSM1050311: H3K4me1 ChIP-Seq Day2 rtta; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Day2 differentiating rtta ESCs, H3K4me1 ChIP
strain
C57BL/6:129 SvJae F1
cell type
Day2 differentiating rtta ESCs
passage
20-25
chip antibody
H3K4me1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26911958
Reads aligned (%)
88.6
Duplicates removed (%)
6.2
Number of peaks
214 (qval < 1E-05)

mm9

Number of total reads
26911958
Reads aligned (%)
88.5
Duplicates removed (%)
6.3
Number of peaks
245 (qval < 1E-05)

Base call quality data from DBCLS SRA