SRX209313
GSM1050288: Sox2 NPC ChIP-Seq, rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Sox2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES-derived neural progenitor cells, Sox2 ChIP
strain
C57BL/6:129 SvJae F1
cell type
ES-derived neural progenitor cells (NPCs)
passage
18-20
chip antibody
Sox2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12601989
Reads aligned (%)
55.4
Duplicates removed (%)
5.8
Number of peaks
7837 (qval < 1E-05)

mm9

Number of total reads
12601989
Reads aligned (%)
55.3
Duplicates removed (%)
6.1
Number of peaks
7856 (qval < 1E-05)

Base call quality data from DBCLS SRA