Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Neural

Cell type

Nucleus Accumbens

MeSH Description

Collection of pleomorphic cells in the caudal part of the anterior horn of the LATERAL VENTRICLE, in the region of the OLFACTORY TUBERCLE, lying between the head of the CAUDATE NUCLEUS and the ANTERIOR PERFORATED SUBSTANCE. It is part of the so-called VENTRAL STRIATUM, a composite structure considered part of the BASAL GANGLIA.

Sample

source_name

NAc dissection from 3-5 animals

tissue

nucleus accumbens

strain

C57BL/6

chip antibody

H3K4me1

treatment

Repeated cocaine I.P. injection for 1w at 20mg/kg

chip antibody vendor/catalog

Abcam Cat#ab1012

passages

N/A

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

252801288

Reads aligned (%)

88.8

Duplicates removed (%)

11.6

Number of peaks

135395 (qval < 1E-05)

mm9

Number of total reads

252801288

Reads aligned (%)

88.7

Duplicates removed (%)

11.6

Number of peaks

136364 (qval < 1E-05)