Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary
strain
mixed
tissue
Mammary gland
state
lactation day one
genotype
homozygous for the Stat5 enhancer mutation (Stat5deltaE/deltaE)
chip antibody
H3K27ac (Abcam, ab4729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Frozen-stored mammary tissues were broken into powder with mortar and pestle. Nuclei were extracted in Farnham lysis buffer (5mM PIPES pH8.0, 85mM KCl, 0.5% NP-40 and protease inhibitors). Antibodies against STAT5A (Santa Cruz, sc-1081), GR (Thermo Scientific, PA1-511A), H3K27ac (Abcam, Ab4729), STAT3 (Santa Cruz, sc-482) were used for ChIP-seq. Libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
39468617
Reads aligned (%)
94.4
Duplicates removed (%)
15.4
Number of peaks
16229 (qval < 1E-05)

mm9

Number of total reads
39468617
Reads aligned (%)
94.3
Duplicates removed (%)
15.4
Number of peaks
16223 (qval < 1E-05)

Base call quality data from DBCLS SRA