SRX208771
GSM1048417: BC177 [ChIP-Seq]; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
rpc-1

Cell type

Cell type Class
Embryo
Cell type
Mixed embryo
NA
NA

Attributes by original data submitter

Sample

source_name
Mixed-stage embryos
strain
N2
treatment
Empty vector RNAi
chip antibody
SDQ4663_RPC1 [Novus Biologicals, catalog# 53330002, lot# G3048-240A02, Animal SDQ4663]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
14095169
Reads aligned (%)
89.3
Duplicates removed (%)
54.3
Number of peaks
1356 (qval < 1E-05)

ce10

Number of total reads
14095169
Reads aligned (%)
89.3
Duplicates removed (%)
54.3
Number of peaks
1357 (qval < 1E-05)

Base call quality data from DBCLS SRA