SRX208051
GSM1047935: mES H3K27me3 shluc ctrl for H2AZKD rpt; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse ES cells, shluc control, H3K27me3 ChIP
cell line
CMTi-1
cell type
embryonic stem cells
condition
shluc control for shH2A.Z mES cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28218458
Reads aligned (%)
31.0
Duplicates removed (%)
28.9
Number of peaks
369 (qval < 1E-05)

mm9

Number of total reads
28218458
Reads aligned (%)
31.0
Duplicates removed (%)
28.9
Number of peaks
341 (qval < 1E-05)

Base call quality data from DBCLS SRA