Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
Ovaries
tissue age
Newly eclosed (>6hr old)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Ovaries were cross-linked with 1.8% formaldegyde and Su(Hw)-DNA complexes were isolated with anti-Su(Hw) guinea pig antibody (Baxley et al., 2011). Single-end libraries for Illumina high-throughput sequencing were prepared from ~100ng of DNA from each fraction (Cincinnati Children's Hospital Medical Center Genetic Variation and Gene Discovery Core Facility, Cincinnati, OH, USA)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm6

Number of total reads
47610776
Reads aligned (%)
68.8
Duplicates removed (%)
29.6
Number of peaks
3524 (qval < 1E-05)

dm3

Number of total reads
47610776
Reads aligned (%)
69.0
Duplicates removed (%)
26.8
Number of peaks
2991 (qval < 1E-05)

Base call quality data from DBCLS SRA