ChIP-Atlas: SRX206844

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: Embryonic Stem Cells
cell type: embryonic stem cells
strain: C57BL6/J (Mus m. domesticus) x JF1 (Mus m. molossinus)
passages: passages 5-10

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 85325283
Reads aligned (%): 93.8
Duplicates removed (%): 40.0
Number of peaks: 55070 (qval < 1E-05)

mm9

Number of total reads: 85325283
Reads aligned (%): 93.2
Duplicates removed (%): 39.8
Number of peaks: 60968 (qval < 1E-05)

Base call quality data from DBCLS SRA