SRX206843
GSM1045477: uH2A Millipore sh3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2Aub

Cell type

Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
DU145 prostate cancer cells
cell line
DU145 prostate cancer cells
genotype/variation
EED knockdown
chip antibody
Anti-uH2A (mouse) [Millipore, cat# 05-678, Lot# 1970374]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20176189
Reads aligned (%)
90.9
Duplicates removed (%)
34.1
Number of peaks
6038 (qval < 1E-05)

hg19

Number of total reads
20176189
Reads aligned (%)
90.2
Duplicates removed (%)
34.5
Number of peaks
6086 (qval < 1E-05)

Base call quality data from DBCLS SRA