SRX206140
GSM1040721: Day9 SSEA1+ M2 K4; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Sorted cells
mark
K4
chip antibody
Anti-Trimethyl Histone H3 (Lys4) Antibody, (Millipore, clone: CMA304, catalog#: 05-1339, lot#: 2024897)
cell stage
Intermediates
thy1
NEG
ssea1
POS
gfp
NEG

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
119405223
Reads aligned (%)
98.3
Duplicates removed (%)
46.9
Number of peaks
31966 (qval < 1E-05)

mm9

Number of total reads
119405223
Reads aligned (%)
98.1
Duplicates removed (%)
46.9
Number of peaks
32037 (qval < 1E-05)

Base call quality data from DBCLS SRA