SRX206136
GSM1040717: KH2-MEF m2 K4; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Sorted cells
mark
K4
chip antibody
Anti-Trimethyl Histone H3 (Lys4) Antibody, (Millipore, clone: CMA304, catalog#: 05-1339, lot#: 2024897)
cell stage
MEF
thy1
POS
ssea1
NEG
gfp
NEG

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
116324662
Reads aligned (%)
97.4
Duplicates removed (%)
70.3
Number of peaks
25659 (qval < 1E-05)

mm9

Number of total reads
116324662
Reads aligned (%)
97.2
Duplicates removed (%)
70.4
Number of peaks
25730 (qval < 1E-05)

Base call quality data from DBCLS SRA