Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116, DMSO treated
cell line
Colorectal Adenocarcinoma Cell Line HCT116
chip antibody
p53 (DO1) (Calbiochem, catalog# OP43-100mg, lot# 2635181)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Custom Illumina TruSeq ChIP Library Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
59402402
Reads aligned (%)
92.6
Duplicates removed (%)
4.4
Number of peaks
1623 (qval < 1E-05)

hg38

Number of total reads
59402402
Reads aligned (%)
94.0
Duplicates removed (%)
3.6
Number of peaks
1510 (qval < 1E-05)

Base call quality data from DBCLS SRA