SRX205959
GSM1040431: activatedB WT S gH2AXip a

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.XS139ph

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
chip antibody manufacturer
Epitomics
cell type
in vitro activated B cells
strain
C57BL/6
genotype
WT
chip antibody
gammaH2AX
cell cycle
S

Sequenced DNA Library

library_name
GSM1040431: activatedB_WT_S_gH2AXip_a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33614928
Reads aligned (%)
79.6
Duplicates removed (%)
33.6
Number of peaks
3781 (qval < 1E-05)

mm9

Number of total reads
33614928
Reads aligned (%)
79.5
Duplicates removed (%)
33.7
Number of peaks
3791 (qval < 1E-05)

Base call quality data from DBCLS SRA