SRX205945
GSM1040417: activatedB ER-IsceI 53BP1ko AIDko RPAip 0min

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
chip antibody manufacturer
Calbiochem
cell type
in vitro activated B cells
strain
C57BL/6
genotype
ER-IsceI_53BP1ko_AIDko
chip antibody
RPA
cell treatment
TAM 0h

Sequenced DNA Library

library_name
GSM1040417: activatedB_ER-IsceI_53BP1ko_AIDko_RPAip_0min
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32076246
Reads aligned (%)
87.1
Duplicates removed (%)
49.3
Number of peaks
669 (qval < 1E-05)

mm9

Number of total reads
32076246
Reads aligned (%)
87.0
Duplicates removed (%)
49.4
Number of peaks
674 (qval < 1E-05)

Base call quality data from DBCLS SRA