SRX205933
GSM1040405: activatedB 53BP1ko G2M gH2AXip a

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.XS139ph

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
chip antibody manufacturer
Epitomics
cell type
in vitro activated B cells
strain
C57BL/6
genotype
53BP1ko
chip antibody
gammaH2AX
cell cycle
G2M

Sequenced DNA Library

library_name
GSM1040405: activatedB_53BP1ko_G2M_gH2AXip_a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
43658179
Reads aligned (%)
95.0
Duplicates removed (%)
4.1
Number of peaks
265 (qval < 1E-05)

mm9

Number of total reads
43658179
Reads aligned (%)
95.0
Duplicates removed (%)
4.2
Number of peaks
254 (qval < 1E-05)

Base call quality data from DBCLS SRA