SRX205928
GSM1040400: activatedB 53BP1ko ATMko RPAip b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
chip antibody manufacturer
Calbiochem
cell type
in vitro activated B cells
strain
C57BL/6
genotype
53BP1ko_ATMko
chip antibody
RPA

Sequenced DNA Library

library_name
GSM1040400: activatedB_53BP1ko_ATMko_RPAip_b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30094258
Reads aligned (%)
91.9
Duplicates removed (%)
28.7
Number of peaks
847 (qval < 1E-05)

mm9

Number of total reads
30094258
Reads aligned (%)
91.8
Duplicates removed (%)
28.8
Number of peaks
877 (qval < 1E-05)

Base call quality data from DBCLS SRA