SRX2053280
GSM2292564: ANPL+EMF+AuNPs H3K27ac ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Neural
Cell type
Induced dopamine neurons
NA
NA

Attributes by original data submitter

Sample

source_name
fibroblast
cell type
direct lineage reprogramming into induced dopamine neurons
antibody
H3K27ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA libraries were made using KAPA library preparation kit (Illumina), according to the manufacturer’s instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7440954
Reads aligned (%)
95.4
Duplicates removed (%)
5.4
Number of peaks
107 (qval < 1E-05)

mm9

Number of total reads
7440954
Reads aligned (%)
95.3
Duplicates removed (%)
5.5
Number of peaks
82 (qval < 1E-05)

Base call quality data from DBCLS SRA