Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
a549 3D culture
cell line
A549
treated twice with
10 ng/mL TNF and 2 ng/mL TGF for 48hr each
chip antibody
H3K4me3
chip antibody vendor
Active Motif

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
26082235
Reads aligned (%)
91.1
Duplicates removed (%)
21.2
Number of peaks
43571 (qval < 1E-05)

hg19

Number of total reads
26082235
Reads aligned (%)
90.8
Duplicates removed (%)
21.3
Number of peaks
43739 (qval < 1E-05)

Base call quality data from DBCLS SRA