SRX205085
GSM1038454: H3K4me2-a549-3d-treated; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
a549 3D culture
cell line
A549
treated twice with
10 ng/mL TNF and 2 ng/mL TGF for 48hr each
chip antibody
H3K4me2
chip antibody vendor
Active Motif

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32832540
Reads aligned (%)
88.0
Duplicates removed (%)
10.4
Number of peaks
81432 (qval < 1E-05)

hg19

Number of total reads
32832540
Reads aligned (%)
87.7
Duplicates removed (%)
10.4
Number of peaks
81465 (qval < 1E-05)

Base call quality data from DBCLS SRA