SRX205082
GSM1038451: H3K4me1-a549-3d-control; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
a549 3D culture
cell line
A549
chip antibody
H3K4me1
chip antibody vendor
Active Motif

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22370293
Reads aligned (%)
89.9
Duplicates removed (%)
4.3
Number of peaks
1363 (qval < 1E-05)

hg19

Number of total reads
22370293
Reads aligned (%)
89.5
Duplicates removed (%)
4.5
Number of peaks
1417 (qval < 1E-05)

Base call quality data from DBCLS SRA