SRX205071
GSM1038440: H2AZ-a549-3d-treated; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
a549 3D culture
cell line
A549
treated twice with
10 ng/mL TNF and 2 ng/mL TGF for 48hr each
chip antibody
H2AZ
chip antibody vendor
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33485538
Reads aligned (%)
78.2
Duplicates removed (%)
27.3
Number of peaks
898 (qval < 1E-05)

hg19

Number of total reads
33485538
Reads aligned (%)
77.7
Duplicates removed (%)
27.9
Number of peaks
926 (qval < 1E-05)

Base call quality data from DBCLS SRA