Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
Glioblastoma
chip antibody
Brd4
chip antibody details
Bethyl A301-985A
cell type
U87
duration
6h
treatment
DMSO
concentration
0.05%

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
58189829
Reads aligned (%)
80.7
Duplicates removed (%)
14.2
Number of peaks
48433 (qval < 1E-05)

hg38

Number of total reads
58189829
Reads aligned (%)
82.0
Duplicates removed (%)
13.5
Number of peaks
48589 (qval < 1E-05)

Base call quality data from DBCLS SRA