SRX204894
GSM1038232: activatedB wt polII chip; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
strain
C57BL/6
cell type
Splenocyte (B lymphocytes)
genotype
Trp53bp1+/+ Aicda+/+
chip antibody
serine 5-phosphorylated RNA Polymerase II (Abcam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39228733
Reads aligned (%)
76.2
Duplicates removed (%)
66.7
Number of peaks
29389 (qval < 1E-05)

mm9

Number of total reads
39228733
Reads aligned (%)
76.1
Duplicates removed (%)
66.7
Number of peaks
29361 (qval < 1E-05)

Base call quality data from DBCLS SRA