SRX204646
GSM1037489: Input DNA iPSC 4N positive PF1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPS cell from PF cell
cell type
mouse secondary system derived iPS cell
passages
15-25
strain
129Sv/C57 mixed background
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39410408
Reads aligned (%)
98.1
Duplicates removed (%)
11.8
Number of peaks
352 (qval < 1E-05)

mm9

Number of total reads
39410408
Reads aligned (%)
97.9
Duplicates removed (%)
11.7
Number of peaks
371 (qval < 1E-05)

Base call quality data from DBCLS SRA