SRX204640
GSM1037483: H2AX WT MEFs 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.X

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF cell
cell type
mouse primary embryonic fibroblasts cell
passages
3-5
strain
129/c57 mixed background
antibody
H2A.X
antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41573574
Reads aligned (%)
97.7
Duplicates removed (%)
14.9
Number of peaks
367 (qval < 1E-05)

mm9

Number of total reads
41573574
Reads aligned (%)
97.5
Duplicates removed (%)
14.9
Number of peaks
381 (qval < 1E-05)

Base call quality data from DBCLS SRA