SRX204630
GSM1037473: H2AX iPSC 4N positive Bcell1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.X

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPS cell from B cell
cell type
mouse secondary system derived iPS cell
passages
15-25
strain
129Sv/C57 mixed background
antibody
H2A.X
antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25728378
Reads aligned (%)
96.2
Duplicates removed (%)
12.7
Number of peaks
354 (qval < 1E-05)

mm9

Number of total reads
25728378
Reads aligned (%)
96.0
Duplicates removed (%)
12.8
Number of peaks
365 (qval < 1E-05)

Base call quality data from DBCLS SRA