SRX204336
GSM1036126: ChIPSeq CTCF e11.5 limb; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
Limb bud
embryonic day
E11.5
strain
C57BL/6
chip antibody
CTCF (Millipore, Cat. No. 07-729, Lot No. JCB1881349)
tissue
Limb bud

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
59166004
Reads aligned (%)
98.8
Duplicates removed (%)
44.4
Number of peaks
2177 (qval < 1E-05)

mm9

Number of total reads
59166004
Reads aligned (%)
98.7
Duplicates removed (%)
44.6
Number of peaks
2135 (qval < 1E-05)

Base call quality data from DBCLS SRA