SRX204329
GSM1036119: Input Smc1a e14.5cortex; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic cortex
embryonic day
E14.5
strain
C57BL/6
tissue
Embryonic cortex

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30572804
Reads aligned (%)
99.1
Duplicates removed (%)
62.0
Number of peaks
540 (qval < 1E-05)

mm9

Number of total reads
30572804
Reads aligned (%)
98.9
Duplicates removed (%)
62.1
Number of peaks
472 (qval < 1E-05)

Base call quality data from DBCLS SRA