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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: UBE2I
wikigenes
PDBj
CellType: WI-38
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX204174
GSM1035436: ras Ubc9 ChIPSeq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
UBE2I
Cell type
Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
ras_Ubc9_ChIPSeq
cell line
WI38
cell type
primary fibroblasts
status
Ras induced senescent
genotype/variation
infected with pBABE-puro-H-RasG12V
chip antibodies
(BD transduction)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
35933877
Reads aligned (%)
55.6
Duplicates removed (%)
34.1
Number of peaks
1534 (qval < 1E-05)
hg38
Number of total reads
35933877
Reads aligned (%)
57.4
Duplicates removed (%)
32.5
Number of peaks
1444 (qval < 1E-05)
Base call quality data from
DBCLS SRA