SRX204150
GSM1035396: rat ts h3k4me3; Rattus norvegicus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Trophoblast stem cells
strain
HSD
chip antibody
H3K4me3 (ActiveMotif, 39159, lot 1609004)
cell type
Trophoblast stem cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

rn6

Number of total reads
8197780
Reads aligned (%)
81.1
Duplicates removed (%)
27.9
Number of peaks
15673 (qval < 1E-05)

Base call quality data from DBCLS SRA