SRX204140
GSM1035386: mouse ts h3k27me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Trophoblast stem cells
strain
129/Sv
chip antibody
H3K27me3 (ActiveMotif, 39535, lot 33310009)
cell type
Trophoblast stem cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4886080
Reads aligned (%)
93.1
Duplicates removed (%)
21.5
Number of peaks
53 (qval < 1E-05)

mm9

Number of total reads
4886080
Reads aligned (%)
92.8
Duplicates removed (%)
22.0
Number of peaks
63 (qval < 1E-05)

Base call quality data from DBCLS SRA