Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Neural

Cell type

Nucleus Accumbens

MeSH Description

Collection of pleomorphic cells in the caudal part of the anterior horn of the LATERAL VENTRICLE, in the region of the OLFACTORY TUBERCLE, lying between the head of the CAUDATE NUCLEUS and the ANTERIOR PERFORATED SUBSTANCE. It is part of the so-called VENTRAL STRIATUM, a composite structure considered part of the BASAL GANGLIA.

Sample

source_name

nucleus accumbens

strain

C57BL/6J

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

H3.3 crosslinking ChIP assays on NAc tissues (bilateral NAc from 5 animals was pooled/N) were performed exactly as previously described (PMID: 26139371). All experiments were analyzed in biological triplicates. Illumina TruSeq ChIP Kit (Manufacturer protocols were followed exactly)

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

75227959

Reads aligned (%)

47.1

Duplicates removed (%)

44.6

Number of peaks

639 (qval < 1E-05)

mm9

Number of total reads

75227959

Reads aligned (%)

47.0

Duplicates removed (%)

44.7

Number of peaks

635 (qval < 1E-05)