SRX203396
GSM1033761: Med1 2 MM1S ChipSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
Chromatin IP against Med1 in MM1S Rep2
diagnosis
Multiple myeloma
chip antibody
Med1/TRAP220
antibody catalog number
Bethyl A300-793A
cell type
Plasma cell
treatment duration
--
treatment concentration
--
treatment drug
--

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27831493
Reads aligned (%)
93.3
Duplicates removed (%)
12.0
Number of peaks
30847 (qval < 1E-05)

hg19

Number of total reads
27831493
Reads aligned (%)
92.7
Duplicates removed (%)
12.4
Number of peaks
30652 (qval < 1E-05)

Base call quality data from DBCLS SRA