Antigen

Antigen Class

TFs and others

Antigen

CDK9

Cell type

Cell type Class

Blood

Cell type

Plasma Cells

MeSH Description

Specialized forms of antibody-producing B-LYMPHOCYTES. They synthesize and secrete immunoglobulin. They are found only in lymphoid organs and at sites of immune responses and normally do not circulate in the blood or lymph. (Rosen et al., Dictionary of Immunology, 1989, p169 & Abbas et al., Cellular and Molecular Immunology, 2d ed, p20)

Sample

source_name

Chromatin IP against CDK9 in MM.1S (500 nM JQ1) for 12022011_B0A1WABXX*

diagnosis

Multiple myeloma

chip antibody

Cdk9

antibody catalog number

Multiple Antibodies SC-8338,SC-484

cell type

Plasma cell

treatment duration

24 hr

treatment concentration

500nM

treatment drug

JQ1

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

25692004

Reads aligned (%)

92.6

Duplicates removed (%)

51.6

Number of peaks

587 (qval < 1E-05)

hg19

Number of total reads

25692004

Reads aligned (%)

91.7

Duplicates removed (%)

52.8

Number of peaks

724 (qval < 1E-05)