SRX203386
GSM1033645: ESC H33KD1 H3gen; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
C57Bl/6 H3.3B-KO
antibody
anti-H3gen (Ab1791)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
288254216
Reads aligned (%)
82.4
Duplicates removed (%)
13.2
Number of peaks
1278 (qval < 1E-05)

mm9

Number of total reads
288254216
Reads aligned (%)
82.2
Duplicates removed (%)
13.1
Number of peaks
1569 (qval < 1E-05)

Base call quality data from DBCLS SRA