SRX203378
GSM1033637: ESC H33KD1 H3K4me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
C57Bl/6 H3.3B-KO
antibody
anti-H3K4me3 (AM39159)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
79011131
Reads aligned (%)
92.1
Duplicates removed (%)
60.1
Number of peaks
57193 (qval < 1E-05)

mm9

Number of total reads
79011131
Reads aligned (%)
92.0
Duplicates removed (%)
60.1
Number of peaks
57187 (qval < 1E-05)

Base call quality data from DBCLS SRA