SRX203344
GSM1033565: H3K27me3 1x10e5 R2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

source_name
Primary (live-frozen) CD4+ cells
cell number
100000
chip antibody
H3K27me3 (Upstate Biotech, Cat# 07-449)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51340196
Reads aligned (%)
99.1
Duplicates removed (%)
95.3
Number of peaks
46 (qval < 1E-05)

hg19

Number of total reads
51340196
Reads aligned (%)
98.9
Duplicates removed (%)
95.6
Number of peaks
45 (qval < 1E-05)

Base call quality data from DBCLS SRA